Citation

If Cis-GS contributes to a publication, please cite:

Mallick A. Cis-GS: a unified pipeline for whole-genome cis-regulatory element discovery, expression coupling, and KEGG enrichment. (Manuscript in preparation, Plant Signaling Lab, IISER Tirupati, 2026.)

BibTeX

@software{mallick_cisgs_2026,
  author  = {Mallick, Ayushman},
  title   = {{Cis-GS}: Cis-regulatory Element Genome Scanner},
  year    = {2026},
  url     = {https://github.com/Ayushmania2002/Cis-GS},
  version = {1.1.0}
}

GitHub also picks up the CITATION.cff in the repo root and exposes a “Cite this repository” button.

Acknowledgements

Cis-GS stands on the shoulders of these databases and tools — please cite the original work whenever you use the corresponding feature:

• PlantTFDB v5 — Tian et al., Nucleic Acids Res., 2020. doi:10.1093/nar/gkz1020

• AnimalTFDB v4 — Shen et al., Nucleic Acids Res., 2023. doi:10.1093/nar/gkac907

• JASPAR 2024 — Rauluseviciute et al., Nucleic Acids Res., 2024. doi:10.1093/nar/gkad1059

• HOCOMOCO v11 — Kulakovskiy et al., Nucleic Acids Res., 2018. doi:10.1093/nar/gkx1106

• KEGG — Kanehisa M., Protein Sci., 2019. doi:10.1002/pro.3715

• MyGene.info — Wu et al., Nucleic Acids Res., 2013. doi:10.1093/nar/gks1114

• logomaker — Tareen & Kinney, Bioinformatics, 2020. doi:10.1093/bioinformatics/btz921