Step 3 — Motif Logos

Renders publication-quality sequence logos for every motif you scanned in Step 2, using logomaker under the hood.

Inputs

  • The motif set imported in Step 2 (or any MEME / IUPAC list).

Settings

  • Information-content shading — characters scaled by Shannon entropy.

  • Colour scheme — classic (A=green, C=blue, G=orange, T=red), Weblogo, Skylign, or grayscale.

  • Reverse-complement — render the RC strand as a separate logo.

Outputs

Per motif: logos/<motif>.svg and logos/<motif>.png.